PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G005500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 443aa    MW: 48934.7 Da    PI: 9.9302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G005500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-17208298199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k+++ps+v +  +l +p +f+++h  k  e++ ++lede+g+    ++   +++++  l++GW++F+  +++k+gD++vF+l+++++
  Sobic.003G005500.1.p 208 FTKAMLPSHVIRGFWLGMPTEFCNKHLPK--EDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESRK 290
                           89**********************99533..4457***************..899888..9**********************998666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Sobic.003G005500.1.p 291 F--KVYIIRA 298
                           6..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-22203299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19203299IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-25207297No hitNo description
SMARTSM010191.5E-17208299IPR003340B3 DNA binding domain
PfamPF023621.1E-15208298IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562208299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKR KRGRPPGSKS  60
AKSRIGSPPG EQSPQSKMEQ KVALVKQRVA LLDSASNSSC SDSDKNDELA IVVCHQPAVL  120
HCGDTDDEGN YNLLKALKSR RLDSEQKKLS GALQAHNAQN IITGVTNIAE ASDINGQILS  180
ASVHGNCGSA MARAKEVQAK LPENHLSFTK AMLPSHVIRG FWLGMPTEFC NKHLPKEDTG  240
IMLEDENGED HHTTYLGSRQ GLSGGWRGFA IKHDIKVGDV LVFQLVESRK FKVYIIRANE  300
FTATDGAISL LNLEARKKGK LLSKATRVEH SVPADDDNVV INKAGRLRIS DSDMDFGDVT  360
SFSDFSIIVD RLVIDCKFQE PLRRTYYELC RSQKAFLHRR QSASRRASRR ARRSGRLPTR  420
TCWCGRRPWS PWLCLAWMSG SC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.93650.0pollen
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ0JP995e-94Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0A9PFY51e-155A0A0A9PFY5_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein